LAFE_0H07888G protein (Lachancea fermentati)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LAFE_0H07888G

LAFE_0H07888g1_1. (664 aa)

Predicted Functional Partners:

SLX1

0.984

LAFE_0C12706G

0.926

LAFE_0C03092G

0.829

LAFE_0H04566G

0.653

LAFE_0F04126G

0.594

LAFE_0D01398G

0.569

LAFE_0B00100G

0.471

LAFE_0C00100G

0.471

LAFE_0C00144G

0.471

LAFE_0E00298G

0.471

Your Current Organism:

Lachancea fermentati

NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LAFE_0B00100G	LAFE_0C12706G	A0A1G4M762	A0A1G4MAA7	LAFE_0B00100g1_1.	LAFE_0C12706g1_1.	0.514
LAFE_0B00100G	LAFE_0D01398G	A0A1G4M762	A0A1G4MAW9	LAFE_0B00100g1_1.	LAFE_0D01398g1_1.	0.514
LAFE_0B00100G	LAFE_0F04126G	A0A1G4M762	A0A1G4MEH9	LAFE_0B00100g1_1.	LAFE_0F04126g1_1.	0.683
LAFE_0B00100G	LAFE_0H04566G	A0A1G4M762	A0A1G4MJW1	LAFE_0B00100g1_1.	LAFE_0H04566g1_1.	0.643
LAFE_0B00100G	LAFE_0H07888G	A0A1G4M762	A0A1G4MJY5	LAFE_0B00100g1_1.	LAFE_0H07888g1_1.	0.471
LAFE_0B00100G	SLX1	A0A1G4M762	A0A1G4M9N5	LAFE_0B00100g1_1.	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.	0.598
LAFE_0C00100G	LAFE_0C12706G	A0A1G4M8S9	A0A1G4MAA7	LAFE_0C00100g1_1.	LAFE_0C12706g1_1.	0.514
LAFE_0C00100G	LAFE_0D01398G	A0A1G4M8S9	A0A1G4MAW9	LAFE_0C00100g1_1.	LAFE_0D01398g1_1.	0.514
LAFE_0C00100G	LAFE_0F04126G	A0A1G4M8S9	A0A1G4MEH9	LAFE_0C00100g1_1.	LAFE_0F04126g1_1.	0.683
LAFE_0C00100G	LAFE_0H04566G	A0A1G4M8S9	A0A1G4MJW1	LAFE_0C00100g1_1.	LAFE_0H04566g1_1.	0.643
LAFE_0C00100G	LAFE_0H07888G	A0A1G4M8S9	A0A1G4MJY5	LAFE_0C00100g1_1.	LAFE_0H07888g1_1.	0.471
LAFE_0C00100G	SLX1	A0A1G4M8S9	A0A1G4M9N5	LAFE_0C00100g1_1.	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.	0.598
LAFE_0C00144G	LAFE_0C12706G	A0A1G4M972	A0A1G4MAA7	LAFE_0C00144g1_1.	LAFE_0C12706g1_1.	0.514
LAFE_0C00144G	LAFE_0D01398G	A0A1G4M972	A0A1G4MAW9	LAFE_0C00144g1_1.	LAFE_0D01398g1_1.	0.514
LAFE_0C00144G	LAFE_0F04126G	A0A1G4M972	A0A1G4MEH9	LAFE_0C00144g1_1.	LAFE_0F04126g1_1.	0.683
LAFE_0C00144G	LAFE_0H04566G	A0A1G4M972	A0A1G4MJW1	LAFE_0C00144g1_1.	LAFE_0H04566g1_1.	0.643
LAFE_0C00144G	LAFE_0H07888G	A0A1G4M972	A0A1G4MJY5	LAFE_0C00144g1_1.	LAFE_0H07888g1_1.	0.471
LAFE_0C00144G	SLX1	A0A1G4M972	A0A1G4M9N5	LAFE_0C00144g1_1.	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.	0.598
LAFE_0C03092G	LAFE_0C12706G	A0A1G4M9L2	A0A1G4MAA7	LAFE_0C03092g1_1.	LAFE_0C12706g1_1.	0.833
LAFE_0C03092G	LAFE_0D01398G	A0A1G4M9L2	A0A1G4MAW9	LAFE_0C03092g1_1.	LAFE_0D01398g1_1.	0.514