STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppSFunction of homologous gene experimentally demonstrated in an other organism; enzyme. (228 aa)    
Predicted Functional Partners:
ispA
Geranyltranstransferase (Farnesyl-diphosphate synthase) (FPP synthase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.894
ispB
Octaprenyl-diphosphate synthase (Octaprenyl pyrophosphate synthetase) (OPP synthetase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.890
uppP
Undecaprenyl-diphosphatase; Function of strongly homologous gene; enzyme.
  
  
 0.882
dfpA
DNA/pantothenate metabolism flavoprotein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.848
truA
tRNA pseudouridine synthase A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.842
glmU
Bifunctional protein GlmU (Includes: UDP-N-acetylglucosamine pyrophosphorylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.840
cdsA
Phosphatidate cytidylyltransferase; Function of strongly homologous gene; enzyme.
  
  
 0.836
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.825
CUV66416.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.801
CUV66417.1
Prepilin peptidase; Function of strongly homologous gene; enzyme.
       0.800
Your Current Organism:
Sulfurovum sp. enrichment
NCBI taxonomy Id: 497650
Other names: S. sp. enrichment culture clone C5, Sulfurovum sp. enrichment culture clone C5
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