STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY21878.1PFAM: phosphoesterase RecJ domain protein; KEGG: mxa:MXAN_4688 single-stranded-DNA-specific exonuclease RecJ. (345 aa)    
Predicted Functional Partners:
EDY21879.1
PFAM: phosphoesterase DHHA1; KEGG: pca:Pcar_1890 single-stranded-DNA-specific exonuclease RecJ.
     0.994
EDY19149.1
KEGG: pca:Pcar_2051 superfamily II DNA and RNA helicases, RecQ-like; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases.
   
 0.917
EDY21745.1
KEGG: gme:Gmet_2717 ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases.
   
 0.899
EDY21876.1
KEGG: gvi:gll1113 hypothetical protein.
       0.773
EDY21877.1
KEGG: gvi:gll1113 hypothetical protein.
       0.773
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
 
     0.684
EDY21880.1
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
    0.626
EDY21248.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 
 0.573
EDY17102.1
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gsu:GSU2550 DNA processing protein DprA.
 
   
 0.549
EDY22043.1
Hydrolase (metallo-beta-lactamase superfamily)-like protein; KEGG: cth:Cthe_0606 DNA internalization-related competence protein ComEC/Rec2.
 
   
 0.469
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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