STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY22010.1PFAM: lipolytic protein G-D-S-L family; KEGG: rba:RB3639 hypothetical protein. (324 aa)    
Predicted Functional Partners:
EDY22270.1
PFAM: glycoside hydrolase family 28; KEGG: sus:Acid_7773 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
  0.985
EDY22265.1
PFAM: Pectinesterase; KEGG: sde:Sde_3447 pectin methylesterase-like.
 
  
  0.977
EDY22267.1
Exo-poly-alpha-galacturonosidase; PFAM: glycoside hydrolase family 28; KEGG: csc:Csac_0361 galacturan 1,4-alpha-galacturonidase; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.959
EDY18687.1
PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3115 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.825
EDY22011.1
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: sus:Acid_3473 type I phosphodiesterase/nucleotide pyrophosphatase.
       0.773
EDY20956.1
Hypothetical protein; KEGG: rba:RB5312 pectate lyase.
 
  
  0.770
EDY17758.1
Hypothetical protein; KEGG: rba:RB5312 pectate lyase.
 
  
  0.770
EDY21119.1
PFAM: Pectinesterase; Ig family protein; Immunoglobulin I-set domain protein; Immunoglobulin V-set domain protein; SMART: Immunoglobulin C2 type; Immunoglobulin subtype; KEGG: chu:CHU_0938 CHU large protein; uncharacterized.
  
  
  0.768
EDY22009.1
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: aba:Acid345_3049 adenylate/guanylate cyclase.
       0.578
EDY18368.1
PFAM: glycosyl hydrolase BNR repeat-containing protein; Glycosyl hydrolase family 32 domain protein; KEGG: fjo:Fjoh_4078 glycosyl hydrolase, BNR repeat-containing protein.
  
  
  0.556
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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