STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY22027.1Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: sus:Acid_4820 transcriptional repressor, CopY family. (113 aa)    
Predicted Functional Partners:
EDY22028.1
Peptidase M56 BlaR1; PFAM: OstA family protein; peptidase M56 BlaR1; KEGG: sus:Acid_4819 TonB family protein; Belongs to the bacterial secretin family.
 
 
 0.985
EDY17115.1
KEGG: noc:Noc_0533 hypothetical protein.
  
  
 0.829
EDY21403.1
KEGG: rca:Rcas_0482 hypothetical protein.
  
     0.552
EDY16309.1
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_0930 protein of unknown function DUF1552.
  
     0.522
EDY19429.1
PFAM: glycoside hydrolase family 16; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16.
  
     0.512
EDY19506.1
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: sus:Acid_0929 protein of unknown function DUF1592.
  
     0.500
EDY22059.1
PFAM: protein of unknown function DUF1552; KEGG: rba:RB7030 hypothetical protein.
  
     0.499
EDY18274.1
KEGG: lma:LmjF35.0290 hypothetical protein, conserved.
    
  0.499
EDY19457.1
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_4306 protein of unknown function DUF1552.
  
     0.486
EDY17335.1
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB10010 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.476
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.