STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY21485.1PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pca:Pcar_2390 biopolymer transport protein. (134 aa)    
Predicted Functional Partners:
EDY21486.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein.
 
   0.931
EDY21483.1
Hypothetical protein.
       0.773
EDY21484.1
Hypothetical protein.
       0.773
EDY15956.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel.
  
   0.731
EDY22039.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: psb:Psyr_1633 MotA/TolQ/ExbB proton channel.
  
   0.702
EDY21928.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rba:RB3932 probable TolQ protein.
  
   0.682
EDY20664.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sus:Acid_7247 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.633
EDY17419.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpb:RPB_2220 MotA/TolQ/ExbB proton channel.
  
 
 0.588
EDY17268.1
Hypothetical protein; KEGG: dre:561838 similar to zonadhesin.
  
   0.587
EDY19885.1
Hypothetical protein; KEGG: ssc:100049648 basic proline-rich protein.
  
 
 0.574
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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