STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY21762.1Hypothetical protein; KEGG: rso:RS02979 putative general secretion pathway GspG related transmembrane protein. (244 aa)    
Predicted Functional Partners:
EDY21157.1
KEGG: rba:RB10099 hypothetical protein.
  
     0.752
EDY17292.1
KEGG: rba:RB8008 hypothetical protein-putative general (type II) secretion pathway protein G.
  
     0.748
EDY19060.1
KEGG: rba:RB3542 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.616
EDY17872.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: ade:Adeh_0641 type IV pilus assembly protein PilM.
  
     0.598
EDY19146.1
Hypothetical protein; KEGG: yen:YE3568 general secretion pathway protein G precursor.
  
     0.597
EDY21760.1
PFAM: glycosyl transferase group 1; KEGG: pna:Pnap_2100 glycosyl transferase, group 1.
       0.566
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
       0.566
EDY17447.1
Hypothetical protein; KEGG: sbo:SBO_3015 putative type II secretion protein.
  
     0.543
EDY18818.1
SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_01156790 SLEI family protein Pfam: TPR_2 TPR_1 Vps53_N TPR_3 Sel1 TOM20_plant FAT Pep3_Vps18 MIT TipAS PROSITE: SBP_BACTERIAL_1 TPR TPR_REGION.
  
     0.538
EDY17868.1
PFAM: type II and III secretion system protein; KEGG: reh:H16_A3543 general secretion pathway protein D; Belongs to the bacterial secretin family.
 
    0.507
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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