STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY20814.1Putative transcriptional regulator; PFAM: regulatory protein MarR; regulatory protein ArsR; transcriptional regulator PadR family protein; KEGG: bra:BRADO7125 conserved hypothetical protein; putative transcriptional regulatory protein, ArsR family. (98 aa)    
Predicted Functional Partners:
EDY20813.1
Hypothetical protein.
       0.773
EDY20837.1
TIGRFAM: PTS system, glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: cvi:CV_0979 protein-N p-phosphohistidine-sugar phosphotransferase.
     
 0.755
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
    0.585
EDY20816.1
Hypothetical protein; KEGG: bbt:BBta_4323 putative membrane protein of unknown function.
       0.584
EDY20817.1
KEGG: fre:Franean1_3528 hypothetical protein.
       0.519
murB
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurB family.
    
  0.485
EDY21514.1
PFAM: PepSY-associated TM helix domain protein; KEGG: mxa:MXAN_3914 PepSY-associated TM helix domain protein.
  
     0.444
EDY20818.1
KEGG: sco:SCO3728 hypothetical protein.
       0.431
EDY20836.1
Phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; sugar-specific permease EIIA 1 domain; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cvi:CV_0980 probable phosphoenolpyruvate-protein phosphotransferase.
   
 
 0.422
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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