STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY19951.1KEGG: rca:Rcas_3354 hypothetical protein. (1042 aa)    
Predicted Functional Partners:
EDY19952.1
PFAM: glycosyl transferase family 2; KEGG: sus:Acid_7491 glycosyl transferase, family 2.
  
    0.789
EDY19950.1
KEGG: cph:Cpha266_2437 hypothetical protein.
      
0.762
EDY19953.1
PFAM: Methyltransferase type 11; KEGG: lip:LIC104 NA.
       0.697
EDY19954.1
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sus:Acid_0574 NAD-dependent epimerase/dehydratase.
       0.697
EDY19955.1
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: sus:Acid_7197 short-chain dehydrogenase/reductase SDR.
       0.697
EDY19956.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: sus:Acid_0417 oxidoreductase domain protein.
       0.697
EDY19949.1
Hypothetical protein.
      
0.676
EDY19957.1
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: mba:Mbar_A0036 dTDP-glucose 4,6-dehydratase.
       0.504
EDY19947.1
Hypothetical protein.
       0.492
EDY19948.1
Hypothetical protein.
       0.492
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.