STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY19628.1PFAM: aminotransferase class V; KEGG: mes:Meso_2373 aminotransferase, class V. (374 aa)    
Predicted Functional Partners:
EDY19168.1
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: sus:Acid_7703 SUF system FeS assembly protein, NifU family.
 
 0.941
EDY19332.1
FeS assembly ATPase SufC; KEGG: lin:lin2510 similar to ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.922
EDY22135.1
PFAM: nitrogen-fixing NifU domain protein; KEGG: msi:Msm_0263 nitrogen fixation protein, NifU.
  
 0.910
EDY19333.1
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: nmr:Nmar_0495 FeS assembly protein SufB.
 
 
 0.906
EDY19334.1
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: rxy:Rxyl_0168 FeS assembly protein SufD.
 
 
 0.902
EDY19629.1
PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5234 major facilitator superfamily MFS_1.
 
     0.810
EDY21168.1
PFAM: Fe-S metabolism associated SufE; KEGG: bba:Bd1961 regulator of cysteine desulfurase activity.
 
 0.763
EDY20279.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppd:Ppro_0900 endonuclease/exonuclease/phosphatase.
  
 
   0.753
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.742
EDY21831.1
Hypothetical protein; KEGG: kra:Krad_3080 Fe-S metabolism associated SufE.
  
 0.711
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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