STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY19728.1Hypothetical protein; KEGG: bba:Bd0590 putative ferredoxin. (135 aa)    
Predicted Functional Partners:
EDY18147.1
Hypothetical protein.
    
 0.770
EDY18148.1
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cau:Caur_0952 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
    
 0.770
EDY19729.1
TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: ajs:Ajs_3366 integron integrase; Belongs to the 'phage' integrase family.
       0.509
EDY19727.1
Hypothetical protein.
       0.498
pgi
PFAM: phosphoglucose isomerase (PGI); KEGG: mxa:MXAN_6908 glucose-6-phosphate isomerase; Belongs to the GPI family.
  
  
  0.442
EDY21597.1
KEGG: scl:sce7629 hypothetical protein.
  
     0.412
greA
GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
     0.409
EDY19140.1
PFAM: Carbohydrate-binding CenC domain protein; KEGG: pen:PSEEN2440 hypothetical protein.
  
     0.402
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.