STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY19439.1Dihydropicolinate synthase-like protein; KEGG: rba:RB10287 similar to dihydropicolinate synthase; Belongs to the DapA family. (304 aa)    
Predicted Functional Partners:
EDY18147.1
Hypothetical protein.
    
 0.719
EDY18148.1
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cau:Caur_0952 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
    
 0.719
EDY18789.1
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB12534 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.642
EDY17502.1
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pca:Pcar_1887 chorismate mutase-P and prephenate dehydratase.
  
  
 0.630
EDY20750.1
Putative transmembrane anti-sigma factor; PFAM: FecR protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rba:RB4239 hypothetical protein-transmembrane prediction.
  
     0.579
EDY19634.1
SMART: LamG domain protein jellyroll fold domain protein; KEGG: rba:RB2842 hypothetical protein-transmembrane prediction.
  
     0.561
EDY18630.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: rba:RB7926 hypothetical protein.
  
     0.558
EDY16158.1
KEGG: rba:RB10195 hypothetical protein.
  
     0.540
EDY17435.1
KEGG: rba:RB9751 hypothetical protein-signal peptide prediction.
  
     0.524
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
 
 0.522
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.