STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY19038.1PFAM: protein of unknown function DUF892; KEGG: gfo:GFO_3571 protein containing DUF892. (168 aa)    
Predicted Functional Partners:
EDY19039.1
PFAM: FAD dependent oxidoreductase; KEGG: hau:Haur_2348 FAD dependent oxidoreductase.
 
     0.650
EDY19040.1
KEGG: mex:Mext_1974 putative DNA topoisomerase I.
 
     0.528
EDY19042.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rba:RB4404 hypothetical oxidoreductase YhxD-putative dehydrogenase of the short-chain dehydrogenase family.
 
     0.424
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.