STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY19048.1PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bra:BRADO0086 ATP-dependent DNA ligase. (333 aa)    
Predicted Functional Partners:
EDY18174.1
TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: aba:Acid345_2863 DNA primase-like.
  
 0.986
EDY19471.1
PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; KEGG: tte:TTE2516 DNA polymerase IV (family X).
  
 0.852
EDY20366.1
KEGG: abo:ABO_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain.
   
 0.837
EDY20367.1
PFAM: DNA polymerase III beta chain; KEGG: gur:Gura_0002 DNA polymerase III, beta subunit.
   
 0.837
EDY18989.1
KEGG: aba:Acid345_4475 DNA ligase I, ATP-dependent (dnl1); TIGRFAM: DNA ligase I, ATP-dependent Dnl1; PFAM: DNA ligase domain protein; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase.
 
 
 0.832
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.819
EDY17162.1
KEGG: mmz:MmarC7_0254 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
 
 0.760
EDY17707.1
PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: bba:Bd0802 DNA polymerase I.
   
 0.741
EDY16650.1
KEGG: ade:Adeh_0229 FAD dependent oxidoreductase.
 
     0.728
EDY19049.1
PFAM: natural resistance-associated macrophage protein; KEGG: sus:Acid_6457 natural resistance-associated macrophage protein.
       0.618
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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