STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY18913.1RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: afw:Anae109_0250 RNA polymerase, sigma-24 subunit, ECF subfamily. (161 aa)    
Predicted Functional Partners:
EDY18914.1
Hypothetical protein.
       0.777
EDY18915.1
SMART: PDZ/DHR/GLGF domain protein; KEGG: pap:PSPA7_4753 serine protease MucD precursor.
       0.758
EDY18910.1
KEGG: scl:sce9304 spermidine/putrescine ABC transporter,spermidine/putrescine-binding protein.
       0.533
EDY18911.1
KEGG: scl:sce9304 spermidine/putrescine ABC transporter,spermidine/putrescine-binding protein.
       0.533
EDY18912.1
Hypothetical protein.
       0.533
EDY16669.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rba:RB7098 probable extracytoplasmic function alternative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.470
EDY19088.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_0090 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.430
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.