STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY18271.1PFAM: cytochrome c class I. (126 aa)    
Predicted Functional Partners:
EDY19075.1
KEGG: mxa:MXAN_5541 cytochrome c oxidase, cbb3-type, subunit I/II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome C oxidase mono-heme subunit/FixO; Belongs to the heme-copper respiratory oxidase family.
  
 0.977
EDY19943.1
PFAM: cytochrome c class I; KEGG: aba:Acid345_0435 hypothetical protein.
  
 0.954
EDY16652.1
KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.904
EDY18270.1
Hypothetical protein.
       0.773
EDY18269.1
PFAM: metallophosphoesterase; KEGG: aba:Acid345_4689 metallophosphoesterase.
       0.752
EDY19043.1
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: mxa:MXAN_1554 iron-sulfur cluster-binding protein, Rieske family.
   
  0.655
EDY18267.1
KEGG: aba:Acid345_4687 putative anti-sigma factor.
       0.498
EDY18268.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aba:Acid345_4688 sigma-24, ECF subfamily.
       0.498
EDY17306.1
PFAM: NHL repeat containing protein; ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB10820 ring finger protein HAC1.
   
  0.489
EDY20307.1
Heme/copper-type cytochrome/quinol oxidase subunit 3-like protein; KEGG: gfo:GFO_0190 cytochrome o ubiquinol oxidase subunit III.
   
  0.477
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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