STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY18326.1PFAM: Carbohydrate-binding CenC domain protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: sde:Sde_0112 hypothetical protein. (1210 aa)    
Predicted Functional Partners:
EDY19759.1
PFAM: Peptidoglycan-binding LysM; KEGG: lme:LEUM_0326 muramidase.
    
 0.678
EDY18321.1
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: gsu:GSU2075 subtilisin.
 
 
  0.621
EDY22165.1
Chromosome segregation ATPase-like protein; KEGG: lma:LmjF34.0690 hypothetical protein, conserved.
   
  0.584
EDY17613.1
KEGG: bvu:BVU_0124 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.
  
 
  0.583
EDY16083.1
SMART: LamG domain protein jellyroll fold domain protein; KEGG: cya:CYA_0280 thrombospondin N-terminal-like domain protein.
  
  
  0.552
EDY18327.1
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: xcv:XCV2153 two-component response regulator.
       0.528
EDY18328.1
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gvi:glr3986 similar to two-component sensor histidine kinase.
       0.528
EDY17089.1
PFAM: NHL repeat containing protein; KEGG: sus:Acid_6565 NHL repeat containing protein.
  
 
   0.525
EDY16765.1
TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: Fibronectin type III domain protein; KEGG: bch:Bcen2424_4933 outer membrane autotransporter barrel domain.
 
  
  0.516
EDY18324.1
KEGG: mul:MUL_0686 methyltransferase/methylase.
       0.493
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.