STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY18360.1KEGG: sbm:Shew185_0869 hypothetical protein. (360 aa)    
Predicted Functional Partners:
EDY16196.1
PFAM: glycosyl transferase family 2; glycoside hydrolase family 2 TIM barrel; KEGG: sfu:Sfum_3546 glycosyl transferase, family 2.
   
 0.719
EDY19702.1
PFAM: peptidase S10 serine carboxypeptidase; KEGG: cau:Caur_1286 peptidase S10 serine carboxypeptidase.
    
  0.504
EDY18361.1
TIGRFAM: heme-binding protein; KEGG: rba:RB24 similar to L-sorbosone dehydrogenase.
       0.476
EDY19130.1
KEGG: rba:RB3006 probable sialidase.
   
  0.472
EDY21806.1
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: rba:RB3006 probable sialidase.
    
  0.471
EDY18848.1
Exo-alpha-sialidase; KEGG: sus:Acid_0193 exo-alpha-sialidase.
    
  0.471
EDY18105.1
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: ret:RHE_CH01081 hypothetical protein.
    
  0.471
EDY18130.1
KEGG: rba:RB11055 hypothetical protein.
    
  0.471
EDY18197.1
KEGG: ret:RHE_CH01081 hypothetical protein.
    
  0.471
EDY17088.1
Hypothetical protein; KEGG: pgi:PG0352 sialidase, putative.
    
  0.471
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.