STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY18013.1TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: spe:Spro_0036 Cof-like hydrolase. (256 aa)    
Predicted Functional Partners:
EDY18650.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.763
EDY20182.1
KEGG: tdn:Tmden_1976 putative transcriptional regulator, AsnC family.
  
     0.646
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.631
EDY20890.1
FAD linked oxidase domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: scl:sce2118 putative oxidoreductase.
    
  0.574
EDY18384.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: spe:Spro_1281 Tol-Pal system YbgF.
  
     0.555
EDY18014.1
Hypothetical protein.
       0.542
EDY17274.1
Hypothetical protein; KEGG: dge:Dgeo_0737 GCN5-related N-acetyltransferase.
  
     0.538
EDY20005.1
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: nph:NP1588A hypothetical protein.
  
     0.529
EDY18446.1
KEGG: gur:Gura_3133 hypothetical protein.
  
     0.469
EDY17534.1
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_2557 peptidase, M50A (S2P protease) subfamily.
  
     0.449
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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