STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY17813.1PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A0409 secretion protein HlyD. (319 aa)    
Predicted Functional Partners:
EDY17814.1
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_0349 ABC transporter-related protein.
    0.968
EDY17816.1
PFAM: ABC-2 type transporter; KEGG: pol:Bpro_3454 ABC-2.
    0.954
EDY17815.1
Hypothetical protein; KEGG: rme:Rmet_0349 ABC transporter-related protein.
 
    0.951
EDY17214.1
PFAM: ABC-2 type transporter; KEGG: rca:Rcas_2358 ABC-2 type transporter.
 
    0.797
EDY17213.1
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_1900 ABC transporter related.
 
    0.775
EDY16449.1
KEGG: reh:H16_B0690 ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
 0.735
rlmH
Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.701
EDY22249.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bmu:Bmul_3375 RND efflux system, outer membrane lipoprotein, NodT family.
  
  0.549
EDY21952.1
PFAM: outer membrane efflux protein; KEGG: gsu:GSU1609 outer membrane efflux protein.
   
  0.491
EDY22258.1
PFAM: outer membrane efflux protein; KEGG: sus:Acid_7567 outer membrane efflux protein.
   
  0.491
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.