STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY17878.1Hypothetical protein. (189 aa)    
Predicted Functional Partners:
EDY17877.1
PFAM: response regulator receiver; KEGG: aha:AHA_3966 DNA-binding response regulator.
       0.535
EDY17879.1
PFAM: TPR repeat-containing protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
       0.455
EDY17880.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cau:Caur_1789 TPR repeat-containing protein.
       0.455
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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