STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY17257.1TIGRFAM: methyltransferase FkbM family; KEGG: rru:Rru_A2093 methyltransferase FkbM. (270 aa)    
Predicted Functional Partners:
EDY17256.1
KEGG: ava:Ava_1042 methyltransferase FkbM.
 
    0.843
EDY17258.1
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: dol:Dole_0532 polysaccharide biosynthesis protein.
       0.777
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.734
EDY22238.1
KR domain protein; PFAM: short-chain dehydrogenase/reductase SDR; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; KEGG: bur:Bcep18194_A3873 beta-ketoacyl synthase.
 
 
 0.632
EDY17259.1
TIGRFAM: methyltransferase FkbM family; KEGG: sus:Acid_4649 methyltransferase FkbM family.
 
    
0.625
EDY17255.1
Hypothetical protein.
       0.623
EDY17253.1
PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3942 glycosyl transferase group 1.
       0.584
EDY17254.1
TIGRFAM: methyltransferase FkbM family; KEGG: pmc:P9515_13901 hypothetical protein.
       0.584
EDY22237.1
Erythronolide synthase; PFAM: Methyltransferase type 11; Methyltransferase type 12; Beta-ketoacyl synthase; Acyl transferase; KEGG: hau:Haur_1873 beta-ketoacyl synthase.
 
 
 0.571
EDY17260.1
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: gvi:glr1179 similar to CDP-tyvelose epimerase.
 
     0.571
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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