STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY16996.1TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bbt:BBta_5909 iron-binding protein IscA (iron-sulfur cluster assembly protein); Belongs to the HesB/IscA family. (115 aa)    
Predicted Functional Partners:
EDY22135.1
PFAM: nitrogen-fixing NifU domain protein; KEGG: msi:Msm_0263 nitrogen fixation protein, NifU.
 
  
 0.790
EDY21319.1
PFAM: heat shock protein DnaJ domain protein; KEGG: gox:GOX1360 hypothetical protein.
  
 
 0.769
EDY19168.1
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: sus:Acid_7703 SUF system FeS assembly protein, NifU family.
  
  
 0.746
EDY16995.1
KEGG: cyb:CYB_0466 protein kinase.
       0.696
EDY20706.1
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; SMART: protein of unknown function SprT; KEGG: chy:CHY_2199 cysteine desulfurase.
 
  
 0.645
EDY16097.1
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpa:RPA2463 putative cysteine desulfurase, NifS homolog.
 
  
 0.622
EDY21880.1
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
  
 0.621
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
 
   
 0.561
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.549
EDY19333.1
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: nmr:Nmar_0495 FeS assembly protein SufB.
  
 
 0.525
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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