STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY16394.1Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rba:RB9879 probable transcription regulator. (56 aa)    
Predicted Functional Partners:
EDY16393.1
TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; KEGG: rba:RB9879 probable transcription regulator.
 
     0.806
EDY16395.1
PFAM: protein of unknown function DUF303 acetylesterase putative.
 
     0.617
EDY16392.1
TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel.
       0.531
EDY20792.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: bam:Bamb_4668 transcriptional regulator, AraC family.
  
     0.479
EDY22322.1
PFAM: protein of unknown function DUF1552; KEGG: rba:RB4854 hypothetical protein-signal peptide prediction.
  
     0.468
EDY16760.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: amr:AM1_6106 transcriptional regulator, AraC family.
  
   0.412
EDY19843.1
Transcriptional regulator, AraC family; TIGRFAM: PAS sensor protein; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: rba:RB9879 probable transcription regulator.
  
     0.403
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.