STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY16274.1TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: rba:RB524 probable secreted glycosyl hydrolase. (1187 aa)    
Predicted Functional Partners:
EDY18514.1
Glucose dehydrogenase-B (pyrroloquinoline-quinone) (precursor)-like protein; KEGG: rba:RB1988 similar to glucose dehydrogenase-B [pyrroloquinoline-quinone] [precursor].
  
  
  0.814
EDY16608.1
TIGRFAM: heme-binding protein; KEGG: rba:RB1988 similar to glucose dehydrogenase-B [pyrroloquinoline-quinone] [precursor].
  
  
  0.814
EDY16758.1
KEGG: rba:RB9713 probable large, multifunctional secreted protein.
  
  
  0.778
EDY18659.1
KEGG: rba:RB9713 probable large, multifunctional secreted protein.
  
  
  0.776
EDY18972.1
Hypothetical protein; KEGG: rba:RB7973 probable cytochrome c precursor.
  
     0.773
EDY19029.1
KEGG: rba:RB3951 putative large multi-functional protein.
  
     0.749
EDY22016.1
PFAM: Pyrrolo-quinoline quinone; Xylose isomerase domain protein TIM barrel; KEGG: swi:Swit_1900 quinoprotein glucose dehydrogenase.
 
  
  0.746
EDY21457.1
KEGG: rba:RB9438 probable large, multifunctional secreted protein.
  
     0.745
EDY18538.1
KEGG: rba:RB9438 probable large, multifunctional secreted protein.
  
     0.727
EDY17809.1
Conserved hypothetical protein; Putative cytochrome c; KEGG: rba:RB728 conserved hypothetical protein-putative cytochrome c.
  
     0.724
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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