STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY16283.1KEGG: sus:Acid_0187 hypothetical protein. (229 aa)    
Predicted Functional Partners:
EDY20838.1
TIGRFAM: cytochrome c nitrate reductase, small subunit; KEGG: mxa:MXAN_2210 putative cytochrome c nitrite reductase, small subunit NrfH.
  
 
 0.835
EDY17665.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: afw:Anae109_1121 outer membrane chaperone Skp (OmpH).
    
 
 0.803
EDY16281.1
Hypothetical protein.
       0.768
EDY16282.1
KEGG: dol:Dole_2048 YD repeat protein.
       0.768
EDY21154.1
Peptidase M28; PFAM: protease-associated PA domain protein; peptidase M28; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: rba:RB6120 probable TolB protein.
    
 
 0.642
EDY16284.1
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: mlo:mlr4613 ECF-family sigma factor.
       0.483
EDY16285.1
PFAM: DGPFAETKE family protein; KEGG: mjl:Mjls_3110 DGPFAETKE family protein.
       0.483
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.446
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
   
 
 0.442
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 
 0.436
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.