STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY16250.1PFAM: peptidase M23B; KEGG: lic:LIC12256 membrane metalloendopeptidase. (399 aa)    
Predicted Functional Partners:
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
    0.788
EDY16252.1
PFAM: nitrogen regulatory protein P-II; KEGG: ngo:NGO1182 putative nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
       0.565
murB
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurB family.
 
 
 
 0.484
EDY21752.1
Penicillin-binding protein, 1A family; KEGG: sat:SYN_00304 multimodular transpeptidase-transglycosylase; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
     0.465
EDY19155.1
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase-transglycosylase.
  
   
 0.451
EDY21160.1
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: atc:AGR_C_158 penicillin-binding protein 1A.
  
     0.442
EDY16253.1
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: sen:SACE_5354 anthranilate synthase component II.
       0.405
EDY16254.1
PFAM: transglutaminase domain protein; KEGG: scl:sce0813 transglutaminase-like enzymes, putative cysteine proteases.
       0.405
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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