STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY16172.1PFAM: lipolytic protein G-D-S-L family; KEGG: rba:RB6332 hypothetical protein. (238 aa)    
Predicted Functional Partners:
EDY16536.1
KEGG: rba:RB4862 similar to pre-neck appendage protein.
  
 
  0.775
EDY16171.1
Hypothetical protein.
       0.762
EDY20750.1
Putative transmembrane anti-sigma factor; PFAM: FecR protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rba:RB4239 hypothetical protein-transmembrane prediction.
  
     0.742
EDY19634.1
SMART: LamG domain protein jellyroll fold domain protein; KEGG: rba:RB2842 hypothetical protein-transmembrane prediction.
  
     0.734
EDY18195.1
SMART: LamG domain protein jellyroll fold domain protein; KEGG: rba:RB2842 hypothetical protein-transmembrane prediction.
  
     0.678
EDY17993.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rba:RB5420 hypothetical protein.
  
     0.671
EDY16363.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rba:RB5421 similar to cycloinulo-oligosaccharide fructanotransferase.
  
     0.603
EDY21817.1
KEGG: rba:RB11249 similar to acyl-CoA thioesterase I.
  
     0.598
EDY18789.1
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB12534 hypothetical protein-signal peptide and transmembrane prediction.
  
 
   0.596
EDY21294.1
PFAM: protein of unknown function DUF1549; KEGG: rba:RB3804 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.591
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.