STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY16118.1Non-specific serine/threonine protein kinase; KEGG: rba:RB5259 helicase, SNF2 family; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases. (897 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.958
EDY17707.1
PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: bba:Bd0802 DNA polymerase I.
   
 0.887
EDY17965.1
SMART: WD-40 repeat protein; KEGG: rrs:RoseRS_4025 NB-ARC domain protein.
   
 0.879
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.875
EDY18989.1
KEGG: aba:Acid345_4475 DNA ligase I, ATP-dependent (dnl1); TIGRFAM: DNA ligase I, ATP-dependent Dnl1; PFAM: DNA ligase domain protein; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase.
   
 0.842
EDY20874.1
PFAM: RNA polymerase alpha subunit domain protein.
    
  0.840
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.840
EDY18669.1
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_4930 amine oxidase, flavin-containing.
    
 0.817
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.778
EDY16798.1
Hypothetical protein.
    
  0.778
Your Current Organism:
Chthoniobacter flavus
NCBI taxonomy Id: 497964
Other names: C. flavus Ellin428, Chthoniobacter flavus Ellin428, Chthoniobacter flavus str. Ellin428, Chthoniobacter flavus strain Ellin428, bacterium Ellin428
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