STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrtAABC transporter nitrate-binding protein; Identified by match to protein family HMM TIGR01409. (480 aa)    
Predicted Functional Partners:
nrtC
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 0.999
CJA_0939
Nitrate transporter system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 0.997
CJA_0010
Possible nitrate transport system permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01183.
 
 0.996
CJA_0528
Nitrate ABC transporter permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01183.
 
 0.984
cynS
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
 
   
 0.935
CJA_0529
Nitrate-binding protein nrtA precursor, periplasmic; AGR_L_1886p; similar to protein from oscillatoriacean cyanobacterium; identified by match to protein family HMM TIGR01409.
  
  
 
0.921
CJA_2343
AtsC; Identified by match to protein family HMM PF00005.
  
 0.883
CJA_2258
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.847
CJA_2720
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.790
CJA_0013
Conserved hypothetical protein; Identified by match to protein family HMM PF07080.
       0.755
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.