STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0030Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (411 aa)    
Predicted Functional Partners:
CJA_0029
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.997
phnL
ABC transporter, ATP-binding subunit; Identified by match to protein family HMM PF00005.
 
 0.976
lolD
Insulin-like growth factor I; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.968
CJA_0032
Membrane fusion efflux protein; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.950
CJA_3462
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.939
CJA_1616
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
     0.921
ftsE
Cell division ABC transporter, ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
   
 0.891
CJA_2534
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF01816; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.858
CJA_0031
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
    
0.795
macB
Macrolide ABC efflux protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
0.627
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.