Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJA_1825 | cadA-1 | CJA_1825 | CJA_0052 | Identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480. | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | 0.402 |
CJA_1825 | cueA | CJA_1825 | CJA_1836 | Identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480. | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | 0.672 |
CJA_1835 | cadA-1 | CJA_1835 | CJA_0052 | Periplasmic metal-binding protein-related protein; Identified by match to protein family HMM PF00403. | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | 0.661 |
CJA_1835 | cueA | CJA_1835 | CJA_1836 | Periplasmic metal-binding protein-related protein; Identified by match to protein family HMM PF00403. | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | 0.820 |
CJA_2023 | cadA-1 | CJA_2023 | CJA_0052 | Conserved hypothetical protein; Identified by match to protein family HMM PF00403. | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | 0.560 |
CJA_2023 | cueA | CJA_2023 | CJA_1836 | Conserved hypothetical protein; Identified by match to protein family HMM PF00403. | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | 0.580 |
cadA-1 | CJA_1825 | CJA_0052 | CJA_1825 | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | Identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480. | 0.402 |
cadA-1 | CJA_1835 | CJA_0052 | CJA_1835 | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | Periplasmic metal-binding protein-related protein; Identified by match to protein family HMM PF00403. | 0.661 |
cadA-1 | CJA_2023 | CJA_0052 | CJA_2023 | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | Conserved hypothetical protein; Identified by match to protein family HMM PF00403. | 0.560 |
cadA-1 | cueA | CJA_0052 | CJA_1836 | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | 0.665 |
cueA | CJA_1825 | CJA_1836 | CJA_1825 | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | Identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480. | 0.672 |
cueA | CJA_1835 | CJA_1836 | CJA_1835 | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | Periplasmic metal-binding protein-related protein; Identified by match to protein family HMM PF00403. | 0.820 |
cueA | CJA_2023 | CJA_1836 | CJA_2023 | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | Conserved hypothetical protein; Identified by match to protein family HMM PF00403. | 0.580 |
cueA | cadA-1 | CJA_1836 | CJA_0052 | Copper transporter; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. | Cadmium translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525. | 0.665 |