Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJA_0069 | CJA_0071 | CJA_0069 | CJA_0071 | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | Putative lipoprotein. | 0.554 |
CJA_0069 | CJA_0072 | CJA_0069 | CJA_0072 | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | Conserved hypothetical protein. | 0.476 |
CJA_0069 | cheB | CJA_0069 | CJA_0073 | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF01339. | 0.447 |
CJA_0069 | pilK | CJA_0069 | CJA_0075 | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | Type IV pili chemotactic methyltransferase PilK; Identified by match to protein family HMM PF01739. | 0.420 |
CJA_0069 | pilL | CJA_0069 | CJA_0074 | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | Type IV pili sensor histidine kinase/response regulator PilL; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895. | 0.425 |
CJA_0071 | CJA_0069 | CJA_0071 | CJA_0069 | Putative lipoprotein. | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | 0.554 |
CJA_0071 | CJA_0072 | CJA_0071 | CJA_0072 | Putative lipoprotein. | Conserved hypothetical protein. | 0.655 |
CJA_0071 | cheB | CJA_0071 | CJA_0073 | Putative lipoprotein. | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF01339. | 0.606 |
CJA_0071 | pilJ | CJA_0071 | CJA_0076 | Putative lipoprotein. | Twitching motility protein PilJ; Identified by match to protein family HMM PF00015. | 0.458 |
CJA_0071 | pilK | CJA_0071 | CJA_0075 | Putative lipoprotein. | Type IV pili chemotactic methyltransferase PilK; Identified by match to protein family HMM PF01739. | 0.568 |
CJA_0071 | pilL | CJA_0071 | CJA_0074 | Putative lipoprotein. | Type IV pili sensor histidine kinase/response regulator PilL; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895. | 0.569 |
CJA_0072 | CJA_0069 | CJA_0072 | CJA_0069 | Conserved hypothetical protein. | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | 0.476 |
CJA_0072 | CJA_0071 | CJA_0072 | CJA_0071 | Conserved hypothetical protein. | Putative lipoprotein. | 0.655 |
CJA_0072 | cheB | CJA_0072 | CJA_0073 | Conserved hypothetical protein. | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF01339. | 0.878 |
CJA_0072 | pilJ | CJA_0072 | CJA_0076 | Conserved hypothetical protein. | Twitching motility protein PilJ; Identified by match to protein family HMM PF00015. | 0.937 |
CJA_0072 | pilK | CJA_0072 | CJA_0075 | Conserved hypothetical protein. | Type IV pili chemotactic methyltransferase PilK; Identified by match to protein family HMM PF01739. | 0.863 |
CJA_0072 | pilL | CJA_0072 | CJA_0074 | Conserved hypothetical protein. | Type IV pili sensor histidine kinase/response regulator PilL; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895. | 0.978 |
cheB | CJA_0069 | CJA_0073 | CJA_0069 | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF01339. | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. | 0.447 |
cheB | CJA_0071 | CJA_0073 | CJA_0071 | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF01339. | Putative lipoprotein. | 0.606 |
cheB | CJA_0072 | CJA_0073 | CJA_0072 | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF01339. | Conserved hypothetical protein. | 0.878 |
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