STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glu81AGlucan endo-1,3-beta-glucanase, putative, glu81A; Identified by match to protein family HMM PF03422. (1165 aa)    
Predicted Functional Partners:
gly16A
Glycoside hydrolase, putative, gly16A; Identified by match to protein family HMM PF00722; match to protein family HMM PF00754; match to protein family HMM PF02018.
 
     0.750
pel1E
Pectate lyase, putative, pel1E; Identified by match to protein family HMM PF00544.
  
     0.729
pel1C
Pectate lyase, putative, pel1C; Identified by match to protein family HMM PF00544.
  
     0.727
CJA_3299
Putative transcriptional regulator; Identified by match to protein family HMM PF00165.
  
     0.723
chi18D
Endo-chitinase, putative, chi18D; Identified by match to protein family HMM PF00704; match to protein family HMM PF02839; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.721
CJA_2762
Transcriptional regulator, AraC family domain protein; Identified by match to protein family HMM PF00165.
  
     0.694
chi18C
Endo-chitinase, putative, chi18C; Identified by match to protein family HMM PF00704; match to protein family HMM PF02839; Belongs to the glycosyl hydrolase 18 family.
  
     0.674
man5B
Endo-1, 4-beta mannanase, man5B; Identified by match to protein family HMM PF00150; match to protein family HMM PF00553; match to protein family HMM PF02013.
  
     0.657
chi18B
Endo-chitinase, putative, chi18B; Identified by match to protein family HMM PF00704; match to protein family HMM PF02839.
  
   
 0.643
cel5A
Endo-1,4-beta glucanase, cel5A; Identified by similarity to PIR:S19652; match to protein family HMM PF00150; match to protein family HMM PF00553; match to protein family HMM PF02013.
  
     0.633
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.