STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gt1BRhamnosyltransferase, putative, gt1B. (413 aa)    
Predicted Functional Partners:
gt1C
Glycosyl transferase, putative, gt1C.
  
  
 
0.929
CJA_1870
Amino acid adenylation domain protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
 
  
 0.721
CJA_3002
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
 
  
 0.701
chi18C
Endo-chitinase, putative, chi18C; Identified by match to protein family HMM PF00704; match to protein family HMM PF02839; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.660
CJA_3000
MmpIV; Identified by match to protein family HMM PF00109; match to protein family HMM PF00515; match to protein family HMM PF00550; match to protein family HMM PF00561; match to protein family HMM PF02801.
 
  
 0.583
CJA_3001
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
 
  
 0.581
CJA_0273
Peptidase, rhomboid family; Identified by match to protein family HMM PF01694.
       0.528
CJA_0270
Hypothetical protein; Identified by Glimmer3; putative.
       0.505
CJA_3003
EpoC; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
 
  
 0.474
mxaD
MxaD; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801.
 
  
 0.455
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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