STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0329Putative dual serine/threonine-protein kinase/phosphatase; Identified by match to protein family HMM PF00069. (587 aa)    
Predicted Functional Partners:
CJA_0330
Nitrate permease; Identified by match to protein family HMM PF07690.
 
    0.932
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.745
CJA_2263
Formate/nitrate transporter; Identified by match to protein family HMM PF01226.
 
     0.742
CJA_1646
Identified by match to protein family HMM PF00481.
 
 
 0.736
ppkA
Serine/threonine protein kinase PpkA; Identified by match to protein family HMM PF00069; match to protein family HMM PF03781.
 
 
0.729
CJA_2262
Identified by match to protein family HMM PF00069; match to protein family HMM PF00481.
 
 
0.693
CJA_1452
Hypothetical protein; Identified by Glimmer3; putative.
  
 
 0.684
CJA_3295
Putative serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515.
 
 
0.678
CJA_1365
Hypothetical protein; Identified by Glimmer3; putative.
   
 0.588
rsgA
GTPase, YjeQ family; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
  
  
 0.560
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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