STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel45ACellulase, putative, cel45A; This enzyme catalyzes the endohydrolysis of 1,4-beta- glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. EGB is most active against barley beta-glucan, but showed significant activity against amorphous and crystalline cellulose. (511 aa)    
Predicted Functional Partners:
pel3C
Pectate lyase, putative, pel3C; Identified by match to protein family HMM PF03211.
  
   0.809
pel3A
Pectate lyase, putative, pel3A; Identified by match to protein family HMM PF03211.
  
   0.803
pel3B
Pectate lyase, putative, pel3B; Identified by match to protein family HMM PF03211.
  
   0.766
xyn11B
Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.763
pel1G
Pectate lyase, putative, pel1G; Identified by match to protein family HMM PF00544.
  
   
 0.751
pel1B
Pectate lyase, putative, pel1B; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.
  
   
 0.738
cgs94A
Cyclic beta-1, 2- glucan synthetase, putative, cgs94A; Identified by match to protein family HMM PF06165.
  
     0.700
man26B
Endo-1, 4-beta mannanase, man26B; Identified by match to protein family HMM PF02013; match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.691
CJA_0832
Cip2.
 
     0.680
pelC
Pectate lyase III; Identified by match to protein family HMM PF00544; match to protein family HMM TIGR01451.
  
   
 0.654
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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