STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0416Fimbrial assembly protein PilQ; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660. (714 aa)    
Predicted Functional Partners:
pilP
Type IV pilus biogenesis protein PilP; Identified by match to protein family HMM PF04351.
 
 
 0.996
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by match to protein family HMM PF05137.
 
 
 0.992
pilM
Type IV pilus assembly protein PilM; Identified by match to protein family HMM TIGR01175.
 
 
 0.985
pilO
pilO; Identified by match to protein family HMM PF04350.
 
 
 0.982
CJA_3583
LysM domain protein; Identified by match to protein family HMM PF01476.
 
 
 
 0.958
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
 0.876
pilF
Type IV pilus biogenesis protein PilF; Identified by match to protein family HMM PF00515.
 
   
 0.832
CJA_2400
MSHA biogenesis protein MshI.
  
 
 0.832
pilZ
Type 4 fimbrial biogenesis protein PilZ; Identified by match to protein family HMM PF07238.
  
   
 0.812
CJA_1748
Conserved hypothetical protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01476.
  
  
 0.773
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.