STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0456Endo-1,4-beta-xylanase B. (310 aa)    
Predicted Functional Partners:
petB
Ubiquinol--cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.896
CJA_3115
Putative lipoprotein.
  
     0.700
CJA_3002
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 
 0.694
CJA_3000
MmpIV; Identified by match to protein family HMM PF00109; match to protein family HMM PF00515; match to protein family HMM PF00550; match to protein family HMM PF00561; match to protein family HMM PF02801.
  
 
 0.655
CJA_3001
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 
 0.655
CJA_3164
Sialic acid-specific 9-O-acetylesterase; Identified by match to protein family HMM PF02837.
  
   
 0.622
CJA_0535
Conserved hypothetical protein; Identified by similarity to GB:CAG77345.1.
  
 
 0.592
CJA_1055
Conserved hypothetical protein; Identified by match to protein family HMM PF07586.
  
     0.554
afc95B
alpha-L-fucosidase, putative, afc95B.
  
     0.539
CJA_1054
Conserved domain protein; Identified by match to protein family HMM PF07626; match to protein family HMM PF07627; match to protein family HMM PF07631; match to protein family HMM PF07637.
  
     0.538
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.