STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0472MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618; match to protein family HMM PF01851. (460 aa)    
Predicted Functional Partners:
CJA_0471
Hypothetical protein; Identified by Glimmer3; putative.
    0.968
CJA_0474
TonB system transport protein ExbD2; Identified by match to protein family HMM PF02472.
 
 
 0.965
CJA_0475
Putative tonB2 protein; Identified by match to protein family HMM TIGR01352.
 
 
 0.957
CJA_0476
TPR domain protein; Identified by match to protein family HMM PF00515.
 
     0.920
CJA_0569
TonB system transport protein ExbD2; Identified by match to protein family HMM PF02472.
 
 
 0.885
CJA_0919
TonB system transport protein ExbD2; Identified by match to protein family HMM PF02472.
 
 
 0.885
CJA_0473
TonB system transport protein ExbB2; Identified by match to protein family HMM PF01618.
    
0.876
CJA_0570
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.870
CJA_0982
TonB2; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.870
CJA_0566
Conserved hypothetical protein.
    0.854
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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