STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
natASodium ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. (255 aa)    
Predicted Functional Partners:
CJA_0604
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
 
 0.988
CJA_3614
ABC-type multidrug transport system, permease component; Identified by match to protein family HMM PF01061.
 
  
 0.931
CJA_0602
Hydrolase, alpha/beta fold family domain protein; Identified by match to protein family HMM PF00561.
 
  
 0.884
CJA_1095
Putative membrane protein.
  
 
 0.879
CJA_3261
ABC transporter domain protein; Identified by match to protein family HMM PF00005.
  
 0.818
CJA_0601
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
  
 0.686
phnL
ABC transporter, ATP-binding subunit; Identified by match to protein family HMM PF00005.
   
0.655
CJA_0599
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.634
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.575
CJA_0600
Putative membrane protein.
       0.517
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.