STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhuMRhuM-like protein; Similar to RhuM of Salmonella typhimurium. (352 aa)    
Predicted Functional Partners:
CJA_0636
Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
  
    0.901
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506.
  
    0.899
CJA_0639
Type I restriction-modification system, R subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851.
       0.781
CJA_3632
HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.709
CJA_0633
Piwi domain protein.
       0.608
CJA_0635
Conserved hypothetical protein; Identified by match to protein family HMM PF05036.
       0.608
hsdS-1
Type I restriction system specificity protein; Identified by match to protein family HMM PF01420.
  
    0.592
CJA_3640
Type I restriction-modification system specificity subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM PF02809.
  
    0.573
CJA_0640
Conserved hypothetical protein.
       0.564
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
      0.428
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.