STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0839Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (220 aa)    
Predicted Functional Partners:
ndk
Nucleotide diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
 
  
 0.661
CJA_3002
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
 
 
 0.647
CJA_0838
AGR_pAT_7p, (AF151698) GlnP/GlnQ homolog; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
  
  
 0.540
CJA_3000
MmpIV; Identified by match to protein family HMM PF00109; match to protein family HMM PF00515; match to protein family HMM PF00550; match to protein family HMM PF00561; match to protein family HMM PF02801.
  
 
 0.509
CJA_1870
Amino acid adenylation domain protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
  
  
 0.502
oruR
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
       0.468
CJA_0841
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.451
CJA_0837
Conserved hypothetical protein; Identified by match to protein family HMM PF00515.
       0.416
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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