STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0875SCO1/SenC superfamily; Identified by match to protein family HMM PF02630. (222 aa)    
Predicted Functional Partners:
CJA_0874
Conserved hypothetical protein; Identified by match to protein family HMM PF04314.
 
   
 0.945
CJA_0872
Uncharacterized protein required for cytochrome oxidase assembly; Identified by match to protein family HMM PF02628.
 
 
 0.923
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.923
CJA_0865
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.914
CJA_0794
Thioredoxin family protein.
 
 
 0.814
CJA_0871
Conserved hypothetical protein.
       0.792
CJA_0302
Hypothetical protein; Identified by Glimmer3; putative.
 
 
 0.785
coxG
Cytochrome oxidase assembly factor; Identified by match to protein family HMM PF04442.
 
 
 0.784
uvs015
Uvs015; Identified by match to protein family HMM TIGR00385.
 
 
 0.780
CJA_0870
Conserved hypothetical protein.
 
  
 0.778
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.