STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_0986Domain of unknown function (DUF404) family; Identified by match to protein family HMM PF04169; match to protein family HMM PF04174; match to protein family HMM PF05036. (545 aa)    
Predicted Functional Partners:
CJA_0987
Bacterial domain of unknown function (DUF403) superfamily; Identified by match to protein family HMM PF04168.
  
 0.992
CJA_0994
Transglutaminase-like superfamily domain protein; Identified by match to protein family HMM PF01841.
 
  
 0.846
CJA_1001
Conserved hypothetical protein.
 
  
 0.790
CJA_0999
Transglutaminase-like superfamily domain protein; Identified by match to protein family HMM PF01841.
  
 0.731
CJA_0995
Domain of unknown function (DUF404) family; Identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.
 
  
0.686
CJA_0985
SM-20 domain protein; Identified by match to protein family HMM PF03171.
       0.528
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.