STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cybPCybP; Identified by match to protein family HMM PF01292. (225 aa)    
Predicted Functional Partners:
cycP
Similar to cytochrome c'' of Rhodopseudomonas sp; identified by match to protein family HMM PF01322.
 
    0.935
CJA_1056
Putative ankyrin G; Identified by match to protein family HMM PF00023.
       0.776
CJA_1059
Putative hydrolase; Identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409.
       0.735
CJA_0399
Uncharacterized conserved protein.
 
     0.599
CJA_1055
Conserved hypothetical protein; Identified by match to protein family HMM PF07586.
       0.577
CJA_1054
Conserved domain protein; Identified by match to protein family HMM PF07626; match to protein family HMM PF07627; match to protein family HMM PF07631; match to protein family HMM PF07637.
       0.567
CJA_1053
Hypothetical protein; Identified by Glimmer3; putative.
       0.424
CJA_3149
Hypothetical protein; Identified by Glimmer3; putative.
  
     0.412
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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