Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CJA_1069Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01782; match to protein family HMM TIGR03304. (1039 aa)    
Predicted Functional Partners:
CJA_1070
Tryptophan halogenase; Identified by match to protein family HMM PF04820.
 
     0.793
CJA_0734
Tryptophan halogenase.
  
     0.686
CJA_3628
Conserved hypothetical protein.
  
     0.666
CJA_0216
Hypothetical protein; Identified by Glimmer3; putative.
  
     0.657
CJA_2246
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR03304.
  
    0.635
CJA_2361
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR03304.
  
     0.621
CJA_0929
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.617
CJA_2287
Putative tonB-dependent receptor protein (outer membrane salicin receptor); Identified by match to protein family HMM PF00593.
  
     0.611
CJA_2881
Tryptophan halogenase; Identified by match to protein family HMM PF04820.
  
     0.606
CJA_0218
Tryptophan halogenase; Identified by match to protein family HMM PF04820.
  
     0.592
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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