STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_1237Putative branched-chain amino acid transport protein (ABC superfamily, ATP_bind); Identified by match to protein family HMM PF00005. (231 aa)    
Predicted Functional Partners:
CJA_1239
Possible permease of ABC transporter; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
CJA_1240
Branched-chain amino acid transport system / permease component domain protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
CJA_1241
ABC transporter, substrate-binding protein.
 
 
 0.992
fmdF
ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.991
CJA_1238
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
0.982
CJA_0957
Amino acid/sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.967
CJA_0956
Amide-urea binding protein; Identified by match to protein family HMM PF01094.
 
 
 0.966
CJA_0960
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 
0.906
CJA_3614
ABC-type multidrug transport system, permease component; Identified by match to protein family HMM PF01061.
 
      0.896
CJA_1552
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.702
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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