STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_1371Identified by match to protein family HMM PF00753. (235 aa)    
Predicted Functional Partners:
CJA_1373
Sulfurtransferase.
 
 0.947
CJA_2238
Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.
 
 
 0.928
CJA_1372
Putative membrane protein; Identified by match to protein family HMM PF01925.
 
     0.808
CJA_3002
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
   
 
 0.643
CJA_3001
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 
 0.586
CJA_3000
MmpIV; Identified by match to protein family HMM PF00109; match to protein family HMM PF00515; match to protein family HMM PF00550; match to protein family HMM PF00561; match to protein family HMM PF02801.
  
 
 0.577
CJA_1374
Transcriptional activator; Identified by match to protein family HMM PF01022.
     
 0.555
guaA
GMP synthase, C- domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
 0.494
gt9B
Lipopolysaccharide heptosyltransferase, putative, gt9B; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193.
  
    0.470
CJA_1370
Conserved hypothetical protein.
  
    0.470
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.