STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
creDInner membrane protein CreD; Identified by match to protein family HMM PF06123. (448 aa)    
Predicted Functional Partners:
creC
Two-component sensor CreC; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
   
 0.933
CJA_2036
Putative membrane protein.
  
     0.750
CJA_1406
Two-component response regulator CreB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   
 0.645
CJA_1338
Conserved hypothetical protein; Identified by similarity to GB:BAB38296.1.
  
     0.526
CJA_3631
Alpha-2-macroglobulin family N-terminal region family; Identified by match to protein family HMM PF01835; match to protein family HMM PF07703.
  
     0.486
CJA_1174
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
  
     0.428
CJA_1405
Regulator protein PecM.
       0.425
gt51B
Murein polymerase, putative, gt51B; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073.
  
     0.421
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.